MSPKmerCounter is implemented in Java and thus can run on both Linux and Windows platforms.
MSPKmerCounter
MSPKmerCounter is a k-mer counter based on the minimum substring partitioning technique. It can count the appearances of k-mers in a fast and memory-efficient manner. MSPCounter is a command-line program that reads DNA sequences in FASTA format. It outputs the k-mer counts in binary format, which can be converted into the readable text format using the "Dump" command. Please refer to the manual below for more details.